miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|188325440|gb|EY766968.1|EY766968 TCATATTCAATTTCCGCCGCAACTATAAAAAGGAGAGTCCTGCTTCAACCCTAGAACATTTCTTTCTTCATCTTCAATTC
CATAACCATAAGGATAGCTTGGTGCAGACTGCAGATAAAGATGAGAGAGAGAGAGAGGAGAGAAATTTCCTCTCTCTTTC
TCTCTACCCACCGACTCTCTCGTCGCTTCGTCTTTTTTTTTCTCTCTTCTTTATCTGTGGGTGGCATTTTTCTTCGATAA
ATGGCCCCCTCATCACTCTGTTAAGATCCGCGGCAAGGAAGGGATTCCACCAAGCCAGCAGAGGTTCCTCTTTACTGGCA
AACAACTTGACGATGGTCGCACGCTTGCAGACTACAATATCAAGTAGTGAACCTTTCATTTGGTCCTCCGTCTCAAGGGT
GGCATGCAGATTTTTGTGAAAACCCTAACCGGCAAAACATAAACTTGGAGATCGATAGCTCTGACACAATCGACAATGTC
AAGGCTAAGATCCAGGATAAAGGAGCGGATTCCGCCGGACCAGCAGAGTCATTATTATTTTTTTTTTTTTGAAGAGCTTT
GAAGTTTCTTTTGGCTTTAACCGAGGTTTGACCTTGAGAATGAATCTGTATCTGGACGGTATAAGAATGTATCTGTATCT
GGACGGTATAAGAATGTATAAGATTGTATCTGGACGGTTTCAGTGAAATTATATAATACCCTTCATTATGTGGTCAA




Most similar to sp|P42739|UBIQP_ACECL

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P42739|UBIQP_ACECL Polyubiquitin (Fragment) OS=Acetabularia
           cliftonii PE=3 SV=2
          Length = 423

 Score =  106 bits (265), Expect = 1e-22
 Identities = 60/91 (65%), Positives = 69/91 (75%), Gaps = 3/91 (3%)
 Frame = +2

Query: 263 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGGMQIFVKTLTGKT 439
           KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GGMQIFVKTLTGKT
Sbjct: 146 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 205

Query: 440 *TWRSIALTQSTMSRLRSRI--KERIPPDQQ 526
            T      +  T+  ++S+I  KE IPPDQQ
Sbjct: 206 ITLE--VESSDTVENVKSKIQDKEGIPPDQQ 234



 Score =  106 bits (265), Expect = 1e-22
 Identities = 60/91 (65%), Positives = 69/91 (75%), Gaps = 3/91 (3%)
 Frame = +2

Query: 263 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGGMQIFVKTLTGKT 439
           KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GGMQIFVKTLTGKT
Sbjct: 222 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 281

Query: 440 *TWRSIALTQSTMSRLRSRI--KERIPPDQQ 526
            T      +  T+  ++S+I  KE IPPDQQ
Sbjct: 282 ITLE--VESSDTVENVKSKIQDKEGIPPDQQ 310



 Score =  106 bits (265), Expect = 1e-22
 Identities = 60/91 (65%), Positives = 69/91 (75%), Gaps = 3/91 (3%)
 Frame = +2

Query: 263 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGGMQIFVKTLTGKT 439
           KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GGMQIFVKTLTGKT
Sbjct: 298 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 357

Query: 440 *TWRSIALTQSTMSRLRSRI--KERIPPDQQ 526
            T      +  T+  ++S+I  KE IPPDQQ
Sbjct: 358 ITLE--VESSDTVENVKSKIQDKEGIPPDQQ 386



 Score =  103 bits (258), Expect = 9e-22
 Identities = 59/91 (64%), Positives = 68/91 (74%), Gaps = 3/91 (3%)
 Frame = +2

Query: 263 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGGMQIFVKTLTGKT 439
           KI+ KEGIPP QQR +F GKQL+DG TLADYNI K  T HLVLRL+GGMQIFVKTLTGKT
Sbjct: 70  KIQDKEGIPPDQQRLIFAGKQLEDGLTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 129

Query: 440 *TWRSIALTQSTMSRLRSRI--KERIPPDQQ 526
            T      +  T+  ++S+I  KE IPPDQQ
Sbjct: 130 ITLE--VESSDTVENVKSKIQDKEGIPPDQQ 158